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The common feature of molecular modelling techniques is the atomistic level description of the molecular systems; the lowest level of information is individual atoms (or a small group of atoms). "Designed Two-Dimensional DNA Holliday Junction Arrays Visualized by Atomic Force Microscopy". • Constantinou, Pamela E.; Wang, Tong; Kopatsch, Jens; Israel, Lisa B.; Zhang, Xiaoping; Ding, Baoquan; Sherman, William B.; Wang, Xing; Zheng, Jianping; Sha, Ruojie & Seeman, Nadrian C. "Double cohesion in structural DNA nanotechnology". Also allows cross-linking of the results with the UCSC Genome browser and DNA dynamics. The database is designed to collect and analyse thermodynamic, structural and other dinucleotide properties. [9] org Comm ii »kt [3] Commercial MDyna^i [5] Common MD GPL Stockholm University [21] MOE Molecular Operating Environment Comm ^cl Miical Computing Group [22] * NAB [6] NAMD Nucleic Acid Builder NAnoscale Molecular Dynamics GPL Free New Jersey University [7] Illinois University [8] List of nucleic acid simulation software 74 See also Molecular Modelling Molecular graphics Molecular mechanics Molecular dynamics Molecular Design software Quantum chemistry computer programs List of RNA structure prediction software List of protein structure prediction software List of software for molecular mechanics modeling Force field Force field implementation References [1] Cornell W. • Uses different format to standard [email protected] cores, as there is more than one "Work Unit" (using the normal definition) in each work packet sent to clients. As of April 9, 2009 the peak speed of the project overall has reached over 4.5 native PFLOPS (8.1 x86 PFLOPS [18] ) from around 400,000 active machines, and the project has received computational results from over 3.75 million devices since it first started. "Mathematical Analysis of Coupled Parallel Simulations". … continue reading »


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